Package: CommEcol 1.8.1

CommEcol: Community Ecology Analyses

Autosimilarity curves, standardization of spatial extent, dissimilarity indexes that overweight rare species, phylogenetic and functional (pairwise and multisample) dissimilarity indexes and nestedness for phylogenetic, functional and other diversity metrics. The methods for phylogenetic and functional nestedness is described in Melo, Cianciaruso and Almeida-Neto (2014) <doi:10.1111/2041-210X.12185>. This should be a complement to available packages, particularly 'vegan'.

Authors:Adriano Sanches Melo [aut, cre]

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CommEcol.pdf |CommEcol.html
CommEcol/json (API)

# Install 'CommEcol' in R:
install.packages('CommEcol', repos = c('https://a-s-melo.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:
  • japi - Macroinvertebrate morphospecies living on stones of a stream in southeast Brazil
  • sites4.6 - Artificial dataset containing 4 samples [rows] and 6 species[columns].
  • sites5.6 - Artificial dataset containing 5 samples [rows] and 6 species[columns].
  • sites6.6 - Artificial dataset containing 6 samples [rows] and 6 species[columns].
  • stairs6 - Example of phylogenetic tree containing 6 species.
  • tree6 - Example of phylogenetic tree containing 6 species.

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

2.36 score 1 stars 1 packages 38 scripts 350 downloads 2 mentions 13 exports 127 dependencies

Last updated 5 months agofrom:35b6772685. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 27 2024
R-4.5-winOKOct 27 2024
R-4.5-linuxOKOct 27 2024
R-4.4-winOKOct 27 2024
R-4.4-macOKOct 27 2024
R-4.3-winOKOct 27 2024
R-4.3-macOKOct 27 2024

Exports:autosimibetaRegDispcompasdis.chaodis.goodalldis.nnessdis.nness.find.mpart.m.treepart.p.treeselect.windowstandExtenttreeNodftreeNodfTest

Dependencies:abindade4adegenetadegraphicsadephyloadespatialapeaskpassbase64encbetapartbootbslibcachemclassclassIntcliclustercodetoolscolorspacecommonmarkcpp11crayoncurlDBIdeldirdigestdoSNOWdplyre1071fansifarverfastmapfastmatchfontawesomeforeachfsgenericsgeometryggplot2gluegmpgtablehmshtmltoolshttpuvhttrigraphinterpisobanditeratorsitertoolsjpegjquerylibjsonliteKernSmoothlabelinglaterlatticelatticeExtralifecyclelinproglpSolvemagicmagrittrMASSMatrixmemoisemgcvmimeminpack.lmmunsellnlmeopensslpermutephylobasepicantepillarpixmappkgconfigplyrpngprettyunitsprogresspromisesproxypurrrR6rappdirsrcddRColorBrewerRcppRcppArmadilloRcppEigenRcppProgressreshape2rlangrnclRNeXMLs2sassscalessegmentedseqinrsfshinysnowsourcetoolsspspDataspdepstringistringrsystibbletidyrtidyselectunitsutf8uuidvctrsveganviridisLitewithrwkXMLxml2xtable