Package: CommEcol 1.8.1
CommEcol: Community Ecology Analyses
Autosimilarity curves, standardization of spatial extent, dissimilarity indexes that overweight rare species, phylogenetic and functional (pairwise and multisample) dissimilarity indexes and nestedness for phylogenetic, functional and other diversity metrics. The methods for phylogenetic and functional nestedness is described in Melo, Cianciaruso and Almeida-Neto (2014) <doi:10.1111/2041-210X.12185>. This should be a complement to available packages, particularly 'vegan'.
Authors:
CommEcol_1.8.1.tar.gz
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CommEcol.pdf |CommEcol.html✨
CommEcol/json (API)
# Install 'CommEcol' in R: |
install.packages('CommEcol', repos = c('https://a-s-melo.r-universe.dev', 'https://cloud.r-project.org')) |
- japi - Macroinvertebrate morphospecies living on stones of a stream in southeast Brazil
- sites4.6 - Artificial dataset containing 4 samples [rows] and 6 species[columns].
- sites5.6 - Artificial dataset containing 5 samples [rows] and 6 species[columns].
- sites6.6 - Artificial dataset containing 6 samples [rows] and 6 species[columns].
- stairs6 - Example of phylogenetic tree containing 6 species.
- tree6 - Example of phylogenetic tree containing 6 species.
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 5 months agofrom:35b6772685. Checks:OK: 7. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Oct 27 2024 |
R-4.5-win | OK | Oct 27 2024 |
R-4.5-linux | OK | Oct 27 2024 |
R-4.4-win | OK | Oct 27 2024 |
R-4.4-mac | OK | Oct 27 2024 |
R-4.3-win | OK | Oct 27 2024 |
R-4.3-mac | OK | Oct 27 2024 |
Exports:autosimibetaRegDispcompasdis.chaodis.goodalldis.nnessdis.nness.find.mpart.m.treepart.p.treeselect.windowstandExtenttreeNodftreeNodfTest
Dependencies:abindade4adegenetadegraphicsadephyloadespatialapeaskpassbase64encbetapartbootbslibcachemclassclassIntcliclustercodetoolscolorspacecommonmarkcpp11crayoncurlDBIdeldirdigestdoSNOWdplyre1071fansifarverfastmapfastmatchfontawesomeforeachfsgenericsgeometryggplot2gluegmpgtablehmshtmltoolshttpuvhttrigraphinterpisobanditeratorsitertoolsjpegjquerylibjsonliteKernSmoothlabelinglaterlatticelatticeExtralifecyclelinproglpSolvemagicmagrittrMASSMatrixmemoisemgcvmimeminpack.lmmunsellnlmeopensslpermutephylobasepicantepillarpixmappkgconfigplyrpngprettyunitsprogresspromisesproxypurrrR6rappdirsrcddRColorBrewerRcppRcppArmadilloRcppEigenRcppProgressreshape2rlangrnclRNeXMLs2sassscalessegmentedseqinrsfshinysnowsourcetoolsspspDataspdepstringistringrsystibbletidyrtidyselectunitsutf8uuidvctrsveganviridisLitewithrwkXMLxml2xtable